McInerney M. J., Rohlin L., Mouttaki H., Kim U., Krupp R. S., Rios-Hernandez L., Sieber J., Struchtemeyer C. G., Bhattacharyya A., Campbell J. W., and Gunsalus R. P. 2007. The genome of Syntrophus aciditrophicus: Life at the thermodynamic limit of microbial growth. PNAS. (104) 7600-7605.

Mouttaki H, Nanny M. A., and McInerney M. J. 2007. Cyclohexane carboxylate and benzoate formation from crotonate in Syntrophus aciditrophicus. Applied and Environmental Microbiology. (73) 930-938

Kuntze K., Shinoda Y., Mouttaki H, McInerney M., Vogt C., Richnow H., and Boll M. 2008. 6-Oxocyclohexene-1-carbonyl-CoA hydrolases from obligately anaerobic bacteria: characterization and identification of its genes as functional marker for aromatic compounds degrading anaerobes. Environmental Microbiology. (10) 1547-1556.

Feng X., Mouttaki H, Zhuang W., Huang R., Zhou J., and Tang Y.J. 2009. Revealing central metabolic pathways in Thermoanaerobacter ethanolicus X514 via isotopic labeling. Applied and Environmental Microbiology. (75) 5001-5008.

Mouttaki H, M. A. Nanny, and M. J. McInerney. 2009. The metabolism of hydroxylated and fluorinated benzoates supports a two-electron reduction mechanism for anaerobic benzoate metabolism by Syntrophus aciditrophicus. Applied and Environmental Microbiology. (75) 998-1004.

Bosch J, Heister K, Hofmann T, Meckenstock RU. 2010. Nanosized iron oxides strongly enhance microbial iron reduction. Applied and Environmental Microbiology (76) 184-289

Hemme C. L., Fields M. W., He Q., Deng Y., Lin L., Tu Q., Mouttaki H, Zhou A., Feng X., Zuo Z., Ramsay B.D., He Z., Wu L., Van Nostrand J., Xu J., Tang Y. J., Wiegel J., Phelps T. J., and Zhou J. 2011. Correlation of genomic and physiological traits to biofuel yields in Thermoanaerobacter species. Applied and Environmental Microbiology. (77) 7998-8008.

Meckenstock R. U., Mouttaki H 2011. Anaerobic degradation of non-substituted aromatic hydrocarbons. Current Opinion in Biotechnology. (22) 406-414.

Müller N, Braun J, Bruns J, Cernik M, Rissing P, Rickerby D, Nowack B. 2012. Application of nanoscale zero valent iron (NZVI) for groundwater remediation in Europe. Environ Sci Pollut Res 19: 550-558.

Mouttaki H, Johannes J.., Meckenstock R. U. 2012. Identification of naphthalene carboxylase as a prototype for the anaerobic activation of non-substituted aromatic hydrocarbons. Environmental Microbiology. (14) 2770-2774.

Lee KY, Bosch J, Meckenstock RU. 2012. Use of metal-reducing bacteria for bioremediation of soil contaminated with mixed organic and inorganic pollutants. Environmental Geochemistry and Health (34) 135-142

Bosch J, Lee KY, Jordan G, Kyoung-Woong K, Meckenstock RU. 2012. Anaerobic, nitrate-dependent oxidation of pyrite nanoparticles by Thiobacillus denitrificans. Environmental Science & Technology (46) 2095-2101

Tosco T, Bosch J, Meckenstock RU, Sethi R. 2012. Transport of ferrihydrite nanoparticles in saturated porous media: role of ionic strength and flow rate. Environmental Science & Technology (46) 4008-4015

Eberlein C., Johannes J., Mouttaki H, Sadeghi M., Golding B. T., Boll M., Meckenstock R. U. 2013. ATP-dependent/-independent enzymatic ring reductions involved in the anaerobic catabolism of naphthalene. Environmental Microbiology. (15) 1832-1841.

Braunschweig J, Bosch J, Heister K, Meckenstock RU. 2013. Iron oxide nanoparticles in geomicrobiology: from biogeochemistry to bioremediation. New Biotechnology (30). 793-802

Höss S, Fritzsche A, Meyer C, Bosch J, Meckenstock RU, Totsche KU. 2015. Size- and Composition-Dependent Toxicity of Synthetic and Soil-Derived Fe Oxide Colloids for the Nematode Caenorhabditis elegans. Environmental Science and Technology (49). 544−552

Meckenstock R. U., Boll M., Mouttaki H., Koelschbach J. S., Cunha Tarouco P., Weyrauch P., Dong X., and Himmelberg A.M. Anaerobic degradation of benzene and polycyclic hydrocarbons. 2016. Journal of Molecular Microbiology and Biotechnology. (26) 92-118.

Mackenzie K, Bleyl S, Kopinke FD, Doose H, Bruns J. 2016. Carbo-Iron as improvement of the nanoiron technology: From laboratory design to the field test. Science of the Total Environment. 641-648.

Nguyen NHA, Von Moosb NR, Slaveykovab VI, Mackenzie K, Meckenstock RU, Thuemmler S, Bosch J, Sevcu A. 2018. Biological effects of four iron-containing nanoremediation materials on the green alga Chlamydomonas sp.. Ecotoxicology and Environmental Safety. 36–44